Overview

Core objective framework including base classes.

Base Classes

class biosym.objectives.base_objective.BaseObjective(model, settings)

Bases: ABC

Abstract base class for objectives in the biosym package. All objectives should inherit from this class and implement the required methods.

abstractmethod get_gradient(*args, **kwargs)

Compute the gradient of the objective function.

Parameters:

• args – Positional arguments for gradient computation.

• kwargs – Keyword arguments for gradient computation.

Returns:

The gradient of the objective function.

abstractmethod get_objfun(*args, **kwargs)

Evaluate the objective function.

Parameters:

• args – Positional arguments for evaluation.

• kwargs – Keyword arguments for evaluation.

Returns:

The evaluated value of the objective function.